PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P01060_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 261aa    MW: 28750.7 Da    PI: 6.9564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P01060_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.5e-1473123255
                             HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +++h  +Er+RR+++N+ ++ Lr+l+P     ++k+ + a+i   +veYIk+Lq
  GSMUA_Achr10P01060_001  73 KTSHITVERNRRKQMNEHLSVLRSLMPCF---YAKRGDQASIIGGVVEYIKELQ 123
                             689*************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.60E-1470127No hitNo description
SuperFamilySSF474593.66E-1870146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.28871122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-1573134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-1173123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-1177128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGESLSELFE HPDASPEDLF SILEAFEDAV SRDMAPFDGR QQRSGHEDDE KAGKALKKRK  60
LSDAPGAQTE QPKTSHITVE RNRRKQMNEH LSVLRSLMPC FYAKRGDQAS IIGGVVEYIK  120
ELQQVLQSLE AKKQRKAYGE VVLSPRPPGS PYMPRMQQNY APPTVPPSHE SSPSFGSSAS  180
ELTANSNSAV AEVEVKFSGP NVILKTVSHR IPGQVLKIVA ALEGLALEIL HVSISTMDDT  240
MLNSFTIKVR TTTTAHQMCF C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15359KALKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0933903e-55FP093390.1 Phyllostachys edulis cDNA clone: bphyem213c13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419792.11e-166PREDICTED: transcription factor SPEECHLESS-like
SwissprotQ9M8K64e-53MUTE_ARATH; Transcription factor MUTE
TrEMBLM0RED30.0M0RED3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P01060_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.16e-52bHLH family protein